Prof. Dr. Enno Ohlebusch Institute of Theoretical Computer Science University of Ulm 89069 Ulm Germany
Book Description
This book provides an introduction to algorithms and data
structures that operate efficiently on strings (especially
those used to represent long DNA sequences). It focuses on
algorithms for sequence analysis (string algorithms), but
also covers genome rearrangement problems and phylogenetic
reconstruction methods.
Topics and features:
- first unified presentation of enhanced suffix arrays
- up-to-date overview of their applications in computer
science and bioinformatics
- special emphasis on solving large-scale problems
- presentation of space-efficient algorithms on strings,
based on the Burrows-Wheeler transform and backward search
- comprehensive coverage of sorting by reversals
- in-depth study of distance-based phylogenetic
reconstruction algorithms
Primarily aimed at graduate or advanced undergraduate
students from computer science or bioinformatics, this book
will also interest practitioners and researchers from these
fields.