[CPM-SPIRE-L] TUDASTIC 2022 - LAST Call for participation - May 9-10 2022

[Camille Marchet]

====================================================================
                            Call for participation

                               TUDASTIC 2022
             1st edition of the thematic school TUtorials
     on DAta Structures for Text Indexation and Compression
                      Lille, France, May 9-10 2022
====================================================================

TUDASTIC aims to gather computer scientists interested in text data
structures from various fields. It intends to facilitate exchanges and
interdisciplinarity between communities that usually hardly communicate and
yet work on related problems. Presentations in the form of tutorials are
encouraged in order to maximize the pedagogical impact and transmission.
Speakers will present their expertise on a chosen data-structure and/or
related algorithms and/or implementation.

Topics of interest include data-structures for: text indexing, string
processing, information retrieval, text compression, self-indexing,
representation of Boolean functions and of database queries ; and their
applications: search tasks, string pattern matching, (bioinformatics) read
alignment and indexation, meta/pan-genomics, transcriptomics, (database)
 graph databases, text mining, document processing, aggregation.

The thematic school will be held at the CRIStAL laboratory, on the
scientific campus of University of Lille. It will take place on May, 9 and
10, 2022.
*Registrations are free but mandatory. Please provide us by email with your
name, affiliation, arrival/departure dates and any special demand (diets,
...) at tudastic at univ-lille.fr <tudastic at univ-lille.fr>.*

Application for student travel grants should be submitted by email at
tudastic at univ-lille.fr.

This meeting is supported by Université de Lille, LINKS Inria team (Lille)
and BONSAI team (Lille), CRIStAL, CNRS, Inria and GDR-IM.


*=================*
PROGRAM
*=================*
*May, 9*

   - 9h00 - 9h45 Welcoming coffee
   - 9h45 - 10h00 Introduction


   - 10h00 - 11h00 *Keynote: *Louis Jachiet (Télécom Paris) - *Measuring
   the algorithmic complexity of algorithms : RAM model, lower bounds, upper
   bounds*
   - 11h00 - 11h30 Thierry Lecroq - *FM-index of Alignment with Gaps*
   - 11h30 - 12h00 Sangsoo Park, Sung Gwan Park, *Bastien Cazaux*, Kunsoo
   Park and Eric Rivals -  *A Linear Time Algorithm for Constructing
   Hierarchical Overlap Graphs *


   - 12h00 - 13h30 Lunch


   - 13h30 - 14h30 Open discussions
   - 14h30 - 15h00 Charles Paperman - *Efficient evaluation on data
   parallelism*
   - 15h00 - 15h30 Coffee break
   - 15h30 - 16h00 Antoine Amarilli - *Data structures for incremental
   maintenance of string properties under updates*
   - 16h00 - 16h30 Rayan Chikhi -
* A perspective on current big biological sequence datasets and their
   search capabilities *

*May, 10*

   - 9h00 - 9h45 Welcoming coffee


   - 9h45 - 10h45* Keynote*: Giulio Ermanno Pibiri (HPC-Lab, ISTI-CNR,
   Pisa, Italy) - *On Weighted K-Mer Dictionaries*
   - 10h45 - 11h15 *Sven Rahmann* and Jens Zentgraf - *Finding genetic
   differences between pig races by efficient   parallel k-mer counting using
   Cuckoo hashing with subtables*
   - 11h15h - 11h45 *Antoine Limasset*, Clément Agret and Bastien Cazaux -*
   Toward optimal fingerprint indexing for large scale genomics*
   - 11h45 - 12h15 *Lucas Robidou* and Pierre Peterlongo - *Visualization
   of Bloom Filters and of k -mer sub-query impact*


   - 12h15 - 13h45 Lunch


=================
VENUE
=================
Bâtiment ESPRIT, avenue Paul Langevin (next to Polytech Lille)
59650 Villeneuve-d'Ascq
https://goo.gl/maps/u8uaruhhJxmqR1x67
Quatre cantons Stade P. Mauroy, terminus of  the metro line 1 (yellow)


=================
ORGANIZATION COMMITTEE
=================
* Florent Capelli, Université de Lille
* Camille Marchet, CNRS, Lille
* Charles Paperman, Université de Lille

All questions about TUDASTIC should be emailed to tudastic at univ-lille.fr

=================
PROGRAM AND STEERING COMMITTEE
=================
* Camille Marchet, CNRS, Lille
* Leena Salmela, University of Helsinki
* Florent Capelli, Université de Lille
* Charles Paperman, Université de Lille
* Blerina Sinaimeri, LUISS University, Rome
* Arnaud Mary, Université Claude Bernard Lyon 1
* Antoine Limasset, CNRS, Lille
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