[CPM-SPIRE-L] Bioinformatics Data Structures summer school

[Travis Gagie]

The University of Helsinki will host a summer school on Bioinformatics Data
Structures from August 9th to 12th, 2016.  The preliminary program for the
summer school is below.  Although speaking slots, rooms and student-travel
grants have already been assigned, anyone still wishing to participate
should contact Travis Gagie (travis.gagie at gmail.com).


Tuesday (Aug 9):

10--11.30 Alexandru Tomescu (Helsinki), “Safe and complete genome and
metagenome assembly via omnitigs”

11.30--13 lunch

13--14.30 Leena Salmela (Helsinki), “Error correction of sequencing reads”

14.30--16 Antti Laaksonen (Aalto), "Maximum subarray problem: History,
variations and applications"


Wednesday (Aug 10):

10--11.30 Shunsuke Inenaga (Kyushu), “The myriad virtues of DAWGs”

11.30--13 lunch

13--14.30 Djamal Belazzougui (CERIST) + Fabio Cunial (MPI), “Suffix-tree
genomics 1”

14.30--16 Jouni Sirén (Sanger), “FM-index and the reverse prefix trie”


Thursday (Aug 11):

10--11.30 Costas Iliopoulos (King’s), “Popping Superbubbles”, “Finding
Clumps”

11.30--13 lunch

13--14.30 Djamal Belazzougui (CERIST) + Fabio Cunial (MPI), “Suffix-tree
genomics 2”

14.30--16 Jouni Sirén (Sanger), “Indexing variation graphs”


Friday (Aug 12):

10--10.30 Szymon Grabowski (Łódź), "Compressed genomic sequences with fast
access"

10.30--11.30 open session (student discussions, open problems)

11.30--13 lunch

13--14.30 Juha Kärkkäinen (Helsinki), “The longest common prefix array”

14.30--16 Alexandru Tomescu (Helsinki), “Min-cost flows and applications to
bioinformatics”



90-minute lectures will be split into two 40-minute sections with a
10-minute break between them.
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